BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB019G01SP1|AL427516
(774 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 543 e-154
>3x_Contig1805
Length = 19369
Score = 543 bits (263), Expect = e-154
Identities = 270/273 (98%)
Strand = Plus / Minus
Query: 502 ttctttttttacgcactggtctattggttaccagatgcgatgaaatgcttctttggagat 561
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3377 ttctttgtgtacgcactggtctattggttaccagatgcgatgaaatgcttctttggagat 3318
Query: 562 aagcttccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttt 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3317 aagcttccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttt 3258
Query: 622 tcattgcatgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtc 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3257 tcattgcatgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtc 3198
Query: 682 agcttctacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3197 agcttctacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatag 3138
Query: 742 aattgttcatgtctacgtgtgtwtaatgtcgga 774
|||||||||||||||||||||| ||||||||||
Sbjct: 3137 aattgttcatgtctacgtgtgtataatgtcgga 3105
Score = 275 bits (133), Expect = 1e-73
Identities = 232/277 (83%), Gaps = 3/277 (1%)
Strand = Plus / Minus
Query: 1 tggttwtttgcctcataataagataattttttcctgctctatttatcatttgctgcggaa 60
||||| ||||||||||||||||| || || | |||||||||| |||| | || ||||||
Sbjct: 3873 tggttatttgcctcataataagagaaattgt-cctgctctatccatcact-gcagcggaa 3816
Query: 61 twgtacgttcgttttgwkaaacgcaattagaaaawatgaaaatcctaaaagttgtacgaw 120
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3815 -agtacgttcgttttgagaaacgcaattagaaaaaatgaaaatcctaaaagttgtacgaa 3757
Query: 121 gtgttctaagwtcwwwctgttgtywtttttttyattytgctaactttcctctgctgcwac 180
|||||||||| || ||| ||| ||||||| || ||| |||||||||||||||| ||
Sbjct: 3756 gtgttctaagatcaaactgatgtcatttttttcatactgcaaactttcctctgctgcaac 3697
Query: 181 cccaytactaggtgtwawwtgtgcwtacgtggggctgccccaccactaaaaggwtcttwa 240
|||| |||||||||| | ||||| |||||||||||||||||||||||||||| || |
Sbjct: 3696 cccactactaggtgtaaaatgtgcatacgtggggctgccccaccactaaaaggatcaaaa 3637
Query: 241 gttttttcgtttggtwttcgactwttttttcgagtta 277
| |||||||||||| ||||| |||| |||||||
Sbjct: 3636 gaattttcgtttggtaatcgacaattttaacgagtta 3600
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.43 0.719 1.35
Gapped
Lambda K H
1.43 0.719 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3154
Number of Sequences: 1807
Number of extensions: 3154
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 774
length of database: 10,358,551
effective HSP length: 16
effective length of query: 758
effective length of database: 10,329,639
effective search space: 7829866362
effective search space used: 7829866362
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.9 bits)
S1: 11 (23.2 bits)
S2: 48 (99.6 bits)